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tasks/tophat2.wdl
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| String cluster | String cluster | ||||
| command { | command { | ||||
| tophat2 -p 24 -o ${baseout} -G ${gtf} --library-type fr-unstranded --solexa-quals ${genome_directory}/${idx_prefix} ${read1} ${read2} | |||||
| tophat2 -p 8 -G ${gtf} -o ${baseout} ${genome_directory}/${idx_prefix} ${read1} ${read2} | |||||
| } | } | ||||
| runtime { | runtime { |
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