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tasks/tophat2.wdl
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| @@ -10,7 +10,7 @@ task tophat2 { | |||
| String cluster | |||
| command { | |||
| tophat2 -p 8 -G ${gtf} -o {base} ${genome_directory}/${idx_prefix} ${read1} ${read2} | |||
| tophat2 -p 8 -G ${gtf} -o ${base} ${genome_directory}/${idx_prefix} ${read1} ${read2} | |||
| } | |||
| runtime { | |||
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