1 changed files with 6 additions and 7 deletions
+ 6
- 7
tasks/cuffdiff2.wdl
View File
| task cuffdiff2 { | task cuffdiff2 { | ||||
| File bam | |||||
| File gtf | File gtf | ||||
| File genome_directory | File genome_directory | ||||
| String idx_prefix | String idx_prefix | ||||
| } | } | ||||
| output { | output { | ||||
| File isoforms_count = "${base}/isoforms.count_tracking" | |||||
| File genes_count = "${base}/genes.count_tracking" | |||||
| File cds_count = "${base}/cds.count_tracking" | |||||
| File isoforms_fpkm = "${base}/isoforms.fpkm_tracking" | |||||
| File genes_fpkm = "${base}/genes.fpkm_tracking" | |||||
| File cds_fpkm = "${base}/cds.fpkm_tracking" | |||||
| File isoforms_count = "${baseout}/isoforms.count_tracking" | |||||
| File genes_count = "${baseout}/genes.count_tracking" | |||||
| File cds_count = "${baseout}/cds.count_tracking" | |||||
| File isoforms_fpkm = "${baseout}/isoforms.fpkm_tracking" | |||||
| File genes_fpkm = "${baseout}/genes.fpkm_tracking" | |||||
| File cds_fpkm = "${baseout}/cds.fpkm_tracking" | |||||
| } | } | ||||
| } | } |
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