trim-revised

tasks/trimmomatic.wdl

@@ -15,7 +15,7 @@ task trimmomatic {
 	}
 
 	output {
-		File read_1p = base + "_1P.fq.gz"
-		File read_2p = base + "_2P.fq.gz"
+		File read_1p = baseout + "_1P.fq.gz"
+		File read_2p = baseout + "_2P.fq.gz"
 	}
 }