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rna-seq-tophat
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RNA-seq pipeline with tophat2 + cufflinks + trimmomatic + fastqc
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rna-seq-tophat/defaults

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add-gtf
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add-gtf
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  1. {

  2.   "{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",

  3.   "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",

  4.   "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8",

  5.   "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14",

  6.   "cuffdiff2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cufflinks:v2.2.1"

  7. 

  8. }