rna-seq-tophat/defaults

{
  "gtf": "oss://pgx-reference-data/reference/tophat2/annotation/gencode.v22.annotation.gtf",
  "genome_directory":"oss://pgx-reference-data/reference/tophat2/genome/",
  "idx_prefix":"tophat2",
  "adapter": "oss://pgx-reference-data/reference/illumina_adapter/TruSeq3-PE.fa",
  "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
  "fastqc_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
  "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8",
  "trimmomatic_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
  "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat:2.0.14_js",
  "tophat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
  "cufflinks_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cufflinks:v2.2.1",
  "cufflinks_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc"
}