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tasks/corealigner.wdl
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| @@ -24,7 +24,7 @@ task corealigner { | |||
| set -e | |||
| export SENTIEON_LICENSE=192.168.0.55:8990 | |||
| nt=$(nproc) | |||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} -t $nt -i ${tumor_recaled_bam} -i ${normal_recaled_bam} --algo Realigner -k ${db_mills} -k ${dbsnp} ${sample}_corealigned.bam | |||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} -t $nt -i ${tumor_recaled_bam} -i ${normal_recaled_bam} --algo Realigner -k ${dbmills_dir}/${db_mills} -k ${dbsnp_dir}/${dbsnp} ${sample}_corealigned.bam | |||
| >>> | |||
| runtime { | |||
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