wes-germline-hg19/inputs

{
  "{{ project_name }}.fasta": "hg19_nochr.fa",
  "{{ project_name }}.ref_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.dbsnp": "dbsnp_138.hg19_nochr_sorted.vcf",
  "{{ project_name }}.fastq_1": "{{ read1 }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg19_nochr.vcf",
  "{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc' }}",
  "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
  "{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.sample": "{{ sample_name }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}", 
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.fastq_2": "{{ read2 }}"
}