输出目录修正

inputs

@@ -1,5 +1,4 @@
 {
-  "{{ project_name }}.qualimap.out_dir": "String (optional, default = \"./\")",
   "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
   "{{ project_name }}.bam": "{{ bam }}",
   "{{ project_name }}.bed": "{{ bed }}",

tasks/qualimap.wdl

@@ -2,7 +2,6 @@ task qualimap {
 	File bam
 	File bed
 	String docker
-	String out_dir = "./"
 	String cluster_config
 	String disk_size
 
@@ -10,7 +9,7 @@ task qualimap {
 		set -o pipefail
 		set -e
 		nt=$(nproc)
-		/opt/qualimap/qualimap bamqc -bam ${bam} -gff ${bed} -nt $nt -outdir ${out_dir} --java-mem-size=16G
+		/opt/qualimap/qualimap bamqc -bam ${bam} -gff ${bed} -nt $nt -outdir ./ --java-mem-size=16G
 	>>>
 
 	runtime {

workflow.wdl

@@ -9,10 +9,10 @@ workflow {{ project_name }} {
 
 	call qualimap.qualimap as qualimap {
 		input:
-		bam=bam,
-		bed=bed,
-		docker=docker,
-		disk_size=disk_size,
-		cluster_config=cluster_config
+			bam=bam,
+			bed=bed,
+			docker=docker,
+			disk_size=disk_size,
+			cluster_config=cluster_config
 	}
 }