lncRNAseq/inputs

{
	"{{ project_name }}.sample_id": "{{ sample_id }}",
	"{{ project_name }}.read1": "{{ read1 }}",
	"{{ project_name }}.read2": "{{ read2 }}",
	"{{ project_name }}.adapter_sequence": "{{ adapter_sequence }}",
	"{{ project_name }}.adapter_sequence_r2": "{{ adapter_sequence_r2 }}",
	"{{ project_name }}.fastp_docker": "{{ fastp_docker }}",
	"{{ project_name }}.fastp_cluster": "{{ fastp_cluster }}",
	"{{ project_name }}.umi_loc": "{{ umi_loc }}",
	"{{ project_name }}.trim_front1": "{{ trim_front1 }}",
	"{{ project_name }}.trim_tail1": "{{ trim_tail1 }}",
	"{{ project_name }}.max_len1": "{{ max_len1 }}",
	"{{ project_name }}.trim_front2": "{{ trim_front2 }}",
	"{{ project_name }}.trim_tail2": "{{ trim_tail2 }}",
	"{{ project_name }}.max_len2": "{{ max_len2 }}",
	"{{ project_name }}.disable_adapter_trimming": "{{ disable_adapter_trimming }}",
	"{{ project_name }}.length_required": "{{ length_required }}",
	"{{ project_name }}.umi_len": "{{ umi_len }}",
	"{{ project_name }}.UMI": "{{ UMI }}",
	"{{ project_name }}.qualified_quality_phred": "{{ qualified_quality_phred }}",
	"{{ project_name }}.length_required1": "{{ length_required1 }}",	
	"{{ project_name }}.disable_quality_filtering": "{{ disable_quality_filtering }}",
	"{{ project_name }}.idx": "{{ idx }}",
	"{{ project_name }}.Trim_R1": "{{ Trim_R1 }}",
	"{{ project_name }}.Trim_R2": "{{ Trim_R2 }}",	
	"{{ project_name }}.idx_prefix": "{{ idx_prefix }}",
	"{{ project_name }}.pen_intronlen": "{{ pen_intronlen }}",
	"{{ project_name }}.hisat2_docker": "{{ hisat2_docker }}",
	"{{ project_name }}.hisat2_cluster": "{{ hisat2_cluster }}",
	"{{ project_name }}.pen_cansplice": "{{ pen_cansplice }}",
	"{{ project_name }}.pen_noncansplice": "{{ pen_noncansplice }}",
	"{{ project_name }}.min_intronlen": "{{ min_intronlen }}",
	"{{ project_name }}.max_intronlen": "{{ max_intronlen }}",
	"{{ project_name }}.maxins": "{{ maxins }}",
	"{{ project_name }}.minins": "{{ minins }}",
	"{{ project_name }}.sam": "{{ sam }}",
	"{{ project_name }}.sorted_bam": "{{ sorted_bam }}",
	"{{ project_name }}.percent_bam ": "{{ percent_bam  }}",
	"{{ project_name }}.sorted_bam_index": "{{ sorted_bam_index }}",
	"{{ project_name }}.ins_size": "{{ ins_size }}",	
	"{{ project_name }}.samtools_docker": "{{ samtools_docker }}",
	"{{ project_name }}.samtools_cluster": "{{ samtools_cluster }}",
	"{{ project_name }}.insert_size": "{{ insert_size }}",
	"{{ project_name }}.bam_file": "{{ bam_file }}",
	"{{ project_name }}.lnc_gtf_file": "{{ lnc_gtf_file }}",
	"{{ project_name }}.subread_docker": "{{ subread_docker }}",
	"{{ project_name }}.subread_cluster": "{{ subread_cluster }}",
	"{{ project_name }}.cpu_num": "{{ cpu_num }}",
	"{{ project_name }}.strand_information": "{{ strand_information }}",
}