|
|
|
|
|
|
|
|
String samtools_cluster |
|
|
String samtools_cluster |
|
|
Int insert_size |
|
|
Int insert_size |
|
|
File lnc_gtf_file |
|
|
File lnc_gtf_file |
|
|
String gtf_dir |
|
|
|
|
|
String subread_docker |
|
|
String subread_docker |
|
|
String subread_cluster |
|
|
String subread_cluster |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
call featureCounts.featureCounts as featureCounts { |
|
|
call featureCounts.featureCounts as featureCounts { |
|
|
input: |
|
|
input: |
|
|
sample_id = sample_id, |
|
|
sample_id = sample_id, |
|
|
bam_file = samtools.out_bam, |
|
|
|
|
|
|
|
|
bam_file = samtools.out_bam, |
|
|
|
|
|
lnc_gtf_file = lnc_gtf_file, |
|
|
docker = subread_docker, |
|
|
docker = subread_docker, |
|
|
cluster = subread_cluster |
|
|
cluster = subread_cluster |
|
|
} |
|
|
} |