更新 'README.md'

README.md

@@ -1 +1,41 @@
-word.docx
+README.md
+Author: Qingwang Chen; Chenglin Liu
+
+Email: qwch20@fudan.edu.cn
+
+Last Updates: 17/01/2022
+
+Brief Introduction
+For RNA-seq data, from bams to AS Information files.
+
+Requirements
+choppy
+Ali-Cloud
+Linux
+# 激活choppy环境
+$ source activate choppy (open-choppy-env)
+
+# 第一次安装
+$ choppy install chenqingwang/fastp_suppa2
+# 非第一次安装
+$ choppy install chenqingwang/fastp_suppa2 -f 
+
+# 查询已安装APP
+$ choppy apps
+Quick Start
+# 准备 samples.csv 文件
+$ choppy samples chenqingwang/fastp_suppa2-latest > samples.csv
+# 准备无默认参数的samples.csv 文件
+choppy samples --no-default chenqingwang/fastp_suppa2-latest > samples.csv
+
+# 提交任务
+$ choppy batch chenqingwang/fastp_suppa2-latest samples.csv -p Your_project_name -l Your_label
+
+# 查询任务运行状况
+$ choppy query -L Your_label | grep "status"
+
+# 查询失败任务
+$ choppy search -s Failed -p Your_project_name -u chenqingwang --short-format
+
+# 结果文件地址
+$ oss://choppy-cromwell-result/test-choppy/Your_project_name/