README.md

Author: Qingwang Chen

Email: qwch20@fudan.edu.cn

Last Updates: 16/10/2020

Requirements

• choppy
• Ali-Cloud

# 激活choppy环境
$ source activate choppy (open-choppy-env)

# 第一次安装
$ choppy install chenqingwang/bam-readcount
# 非第一次安装
$ choppy install chenqingwang/bam-readcount -f 

# 查询已安装APP
$ choppy apps

Quick Start

```

准备 samples.csv 文件

$ choppy samples junshang/bedtools-latest > samples.csv

提交任务

$ choppy batch junshang/bedtools-latest samples.csv -p Your_project_name -l Your_label

查询任务运行状况

$ choppy query -L Your_label | grep “status”

查询失败任务

$ choppy search -s Failed -p Test_bamreadcount_chenqingwang_20201016 -u chenqingwang --short-format

结果文件地址

$ oss://choppy-cromwell-result/test-choppy/Your_project_name/