import "./tasks/BAMReadCount.wdl" as BAMReadCount workflow {{ project_name }} { File ref_dir String fa File bed File bam File bai String min_mapping_quality String min_base_quality String sample_id String docker String cluster_config String disk_size call BAMReadCount.BAMReadCount as BAMReadCount { input: ref_dir=ref_dir, fa=fa, bed=bed, bam=bam, bai=bai, min_mapping_quality=min_mapping_quality, min_base_quality=min_base_quality, docker=docker, disk_size=disk_size, cluster_config=cluster_config, sample_id=sample_id } }