更新 'tasks/BAMReadCount.wdl'

tasks/BAMReadCount.wdl

@@ -12,7 +12,7 @@ task BAMReadCount {
 	String disk_size
 
 	command <<<
-		bam-readcount -w 0 -q1 -f ${fa} -l ${bed} ${bam} > ${sample_id}.readcount
+		bam-readcount -w 0 -q1 -f ${ref_dir}/${fa} -l ${bed} ${bam} > ${sample_id}.readcount
 	>>>
 
 	runtime {