更新 'tasks/BAMReadCount.wdl'

tasks/BAMReadCount.wdl

@@ -11,7 +11,7 @@ task BAMReadCount {
 	String disk_size
 
 	command <<<
-		bam-readcount -f ${reference} -l ${bedfile} ${bamfile} > ${sample_id}.readcount
+		bam-readcount -f ${fa} -l ${bed} ${bam} > ${sample_id}.readcount
 	>>>
 
 	runtime {