更新 'inputs'

inputs

 {
   "{{ project_name }}.docker": "{{ docker }}",
-  "{{ project_name }}.reference": "{{ reference }}",
-  "{{ project_name }}.bedfile": "{{ bedfile }}",
-  "{{ project_name }}.bamfile": "{{ bamfile }}",
+  "{{ project_name }}.fa": "{{ fa }}",
+  "{{ project_name }}.fai": "{{ fai }}",
+  "{{ project_name }}.bed": "{{ bed }}",
+  "{{ project_name }}.bam": "{{ bam }}",
+  "{{ project_name }}.bai": "{{ bai }}",
   "{{ project_name }}.disk_size": "{{ disk_size }}",
   "{{ project_name }}.cluster_config": "{{ cluster_config }}",
   "{{ project_name }}.sample_id": "{{ sample_id }}"
-}
-
+}