import "./tasks/samtools_index.wdl" as samtools_index import "./tasks/spladder.wdl" as spladder workflow {{ project_name }} { String sample_id File bam_file File reference_gtf_file String spladder_docker String spladder_cluster String samtools_docker String samtools_cluster String disk_size call samtools_index.samtools_index as samtools_index { input: bam=bam, docker=samtools_docker, cluster_config=cluster_config, disk_size=disk_size } } call spladder.spladder as spladder { input: reference_gtf_file = reference_gtf_file, sample_id = sample_id, bam = samtools.bam, docker = spladder_docker, cluster = spladder_cluster, disk_size = disk_size } }