import "./tasks/samtools_index.wdl" as samtools_index import "./tasks/spladder.wdl" as spladder workflow {{ project_name }} { String sample_id File bam_file File reference_gtf_file String spladder_docker String spladder_cluster String samtools_docker String samtools_cluster String disk_size call samtools_index.samtools_index as samtools_index { input: bam_file=bam_file, docker=samtools_docker, cluster_config=samtools_cluster, disk_size=disk_size } call spladder.spladder as spladder { input: reference_gtf_file=reference_gtf_file, sample_id=sample_id, bam=samtools_index.bam, docker=spladder_docker, cluster=spladder_cluster, disk_size=disk_size } }