删除 'tasks/samtools_index.wdl'

tasks/samtools_index.wdl

@@ -1,25 +0,0 @@
-task samtools_index {
-	File bam_file
-	String docker
-	String cluster_config
-	String disk_size
-	
-	String clean_bam_name = basename(bam_file)
-	
-	command <<<
-	    samtools index --help
-	    samtools index ${bam_file} ${clean_bam_name}.bai
-	    cp ${bam_file} ./${clean_bam_name}                      
-	>>>
-
-	runtime {
-		docker:docker
-		cluster: cluster_config
-		systemDisk: "cloud_ssd 40"
-		dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
-	}
-	output {
-		File bai = "${clean_bam_name}.bai"
-		File bam = "${clean_bam_name}"          
-	}
-}