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tasks/samtools.wdl
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| mkdir -p /cromwell_root/tmp/ | mkdir -p /cromwell_root/tmp/ | ||||
| cp ${bam_file} /cromwell_root/tmp/ | cp ${bam_file} /cromwell_root/tmp/ | ||||
| /opt/conda/bin/samtools index /cromwell_root/tmp/${bam_id} > $(bam_id).bai | |||||
| /opt/conda/bin/samtools index /cromwell_root/tmp/${bam_id} | |||||
| >>> | >>> | ||||
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