更新 'workflow.wdl'

workflow.wdl

@@ -9,8 +9,18 @@ workflow {{ project_name }} {
 
     String spladder_docker
     String spladder_cluster
+    String samtools_docker
+    String samtools_cluster
     String disk_size	
 
+    call samtools.samtools as samtools {
+        input:
+        docker = samtools_docker,
+        cluster = samtools_cluster,
+        bam_file = bam_file,
+        disk_size = disk_size
+  }
+
 	call spladder.spladder as spladder {
 		input:
 		reference_gtf_file = reference_gtf_file,