SplAdder-quantification-single/README.md

README.md

Author: Qingwang Chen

Email: qwch20@fudan.edu.cn

Last Updates: 22/08/2021

Brief Introduction

Having the merged graph at hand, we can now proceed to quantifying nodes and edges of the graph based on the alignment data. Each quantification will be done independently.

Requirements

• choppy
• Ali-Cloud
• Linux

# 激活choppy环境
$ source activate choppy (open-choppy-env)

# 第一次安装
$ choppy install chenqingwang/SplAdder-quantification-single
# 非第一次安装
$ choppy install chenqingwang/SplAdder-quantification-single -f 

# 查询已安装APP
$ choppy apps

Quick Start

# 准备 samples.csv 文件
$ choppy samples chenqingwang/SplAdder-quantification-single-latest > samples.csv
# 准备无默认参数的samples.csv 文件
$ choppy samples --no-default chenqingwang/SplAdder-quantification-single-latest > samples.csv

# 提交任务
$ choppy batch chenqingwang/SplAdder-quantification-single-latest samples.csv -p Your_project_name -l Your_label

# 查询任务运行状况
$ choppy query -L Your_label | grep "status"

# 查询失败任务
$ choppy search -s Failed -p Your_project_name -u chenqingwang --short-format

# 结果文件地址
$ oss://choppy-cromwell-result/test-choppy/Your_project_name/

Description

# samples: The file names to be analyzed should be written line by line in this file, and the file should be uploaded to AliCloud.