更新 'tasks/spladder_quantification.wdl'

tasks/spladder_quantification.wdl

@@ -20,13 +20,12 @@ task spladder_quantification {
         mkdir -p ${sample_id}/spladder_out/spladder
         
         
-        cat ${samples} | while read a;do cp -r ${pickle}/*$a*.pickle ${sample_id}/spladder_out/spladder/; done           
+        ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/           
                   
         cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/ | grep $a; done >> pickle.txt
 		
-        ln -s ${merge_graphs} ${sample_id}/spladder_out/spladder/
-          
-        mount -o remount rw /
+        cp -r ${merge_graphs} ${sample_id}/spladder_out/spladder/
+
 
           
         nt=$(nproc)