更新 'tasks/spladder_quantification.wdl'

tasks/spladder_quantification.wdl

@@ -19,12 +19,13 @@ task spladder_quantification {
 
         mkdir -p ${sample_id}/spladder_out/spladder
         
-        ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/
+        
+        cat ${samples} | while read a;do cp -r ${pickle}/*$a*.pickle ${sample_id}/spladder_out/spladder/; done           
+                  
         cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/ | grep $a; done >> pickle.txt
 		
         ln -s ${merge_graphs} ${sample_id}/spladder_out/spladder/
           
-        mount -o remount rw /
 
         nt=$(nproc)