import "./tasks/spladder_quantification.wdl" as spladder_quantification workflow {{ project_name }} { String sample_id File bam File pickle File merge_graphs File count_hdf5 File reference_gtf_file File samples String spladder_docker String spladder_cluster String disk_size call spladder_quantification.spladder_quantification as spladder_quantification { input: reference_gtf_file=reference_gtf_file, sample_id=sample_id, bam=bam, pickle=pickle, merge_graphs=merge_graphs, count_hdf5=count_hdf5, samples=samples, spladder_docker=spladder_docker, spladder_cluster=spladder_cluster, disk_size=disk_size } }