更新 'README.md'

README.md

@@ -4,7 +4,7 @@
 >
 > Email: [qwch20@fudan.edu.cn](mailto:qwch20@fudan.edu.cn)
 >
-> Last Updates: 18/08/2021
+> Last Updates: 22/08/2021
 
 #### Brief Introduction
 
@@ -21,9 +21,9 @@ For RNA-seq data, from bams to AS Information files.
 $ source activate choppy (open-choppy-env)
 
 # 第一次安装
-$ choppy install chenqingwang/SplAdder-merge
+$ choppy install chenqingwang/SplAdder-merge-T
 # 非第一次安装
-$ choppy install chenqingwang/SplAdder-merge -f 
+$ choppy install chenqingwang/SplAdder-merge-T -f 
 
 # 查询已安装APP
 $ choppy apps
@@ -33,12 +33,12 @@ $ choppy apps
 
 ```
 # 准备 samples.csv 文件
-$ choppy samples chenqingwang/SplAdder-merge-latest > samples.csv
+$ choppy samples chenqingwang/SplAdder-merge-T-latest > samples.csv
 # 准备无默认参数的samples.csv 文件
-$ choppy samples --no-default chenqingwang/SplAdder-merge-latest > samples.csv
+$ choppy samples --no-default chenqingwang/SplAdder-merge-T-latest > samples.csv
 
 # 提交任务
-$ choppy batch chenqingwang/SplAdder-merge-latest samples.json -p Your_project_name -l Your_label
+$ choppy batch chenqingwang/SplAdder-merge-T-latest samples.csv -p Your_project_name -l Your_label
 
 # 查询任务运行状况
 $ choppy query -L Your_label | grep "status"
@@ -50,26 +50,8 @@ $ choppy search -s Failed -p Your_project_name -u chenqingwang --short-format
 $ oss://choppy-cromwell-result/test-choppy/Your_project_name/
 ```
 
-#### Input File
-Input file samples.json should be in the form of json. For example:
+#### Description
 ```
-{
-	"bam": [
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bam",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bam",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bam"
-        ],
-	"bai": [
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bai",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bai",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.bai"
-        ],
-	"pickle": [
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.pickle",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.pickle",
-          "oss://choppy-cromwell-result/test-choppy/..._xxx.pickle"
-        ],
-	"sample_id": "B13150xx"
-}
-```
-PS: sample_id is necessary for Choppy system
+# samples: The file names to be analyzed should be written line by line in this file, and the file should be uploaded to AliCloud.
+
+```