更新 'tasks/spladder_merge.wdl'

tasks/spladder_merge.wdl

@@ -27,14 +27,14 @@ task spladder_merge {
 		
         nt=$(nproc)
           
-       # spladder build -o ${sample_id}/spladder_out \
-       #   --annotation ${reference_gtf_file} \
-       #   --bams alignment.txt \
-       #   --confidence 2 \
-       #   --merge-strat merge_graphs \
-       #   --readlen 150 \
-       #   --parallel $nt \
-       #   --event-types exon_skip
+        spladder build -o ${sample_id}/spladder_out \
+          --annotation ${reference_gtf_file} \
+          --bams alignment.txt \
+          --confidence 2 \
+          --merge-strat merge_graphs \
+          --readlen 150 \
+          --parallel $nt \
+          --event-types exon_skip
           
         find . -depth > fileList.txt
     >>>