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SplAdder-event-calling
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SplAdder-event-calling/workflow.wdl

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  1. import "./tasks/spladder_EC.wdl" as spladder_EC

  2. 

  3. 

  4. workflow {{ project_name }} {

  5.     String sample_id

  6.     File bam

  7.     File pickle

  8.     File merge_graphs

  9.     File count_hdf5

  10.     File reference_gtf_file

  11.     File samples

  12.     File merge_count_hdf5

  13.     File pickle_list

  14. 

  15.     String event_types

  16.     String spladder_docker

  17.     String spladder_cluster

  18.     String disk_size	

  19. 

  20. 	call spladder_EC.spladder_EC as spladder_EC {

  21. 		input:

  22. 		reference_gtf_file=reference_gtf_file,

  23. 		sample_id=sample_id,

  24. 		bam=bam,

  25. 		pickle=pickle,

  26. 		merge_graphs=merge_graphs,

  27. 		count_hdf5=count_hdf5,

  28. 		samples=samples,

  29. 		merge_count_hdf5=merge_count_hdf5,

  30. 		pickle_list=pickle_list

  31. 		event_types=event_types,

  32. 		spladder_docker=spladder_docker,

  33. 		spladder_cluster=spladder_cluster,

  34. 		disk_size=disk_size

  35. 	}

  36. }