1 ändrade filer med 2 tillägg och 2 borttagningar
+ 2
- 2
tasks/spladder_EC.wdl
Visa fil
| ln -s ${bam}/*.bai ./ | ln -s ${bam}/*.bai ./ | ||||
| cat ${samples} | while read a; do ls ./ | grep bai$ | grep $a; done > alignment_bai.txt | cat ${samples} | while read a; do ls ./ | grep bai$ | grep $a; done > alignment_bai.txt | ||||
| ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/ | |||||
| cp -r ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/ | |||||
| cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep pickle$| grep $a; done >> pickle.txt | cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep pickle$| grep $a; done >> pickle.txt | ||||
| cp -r ${merge_graphs} ${sample_id}/spladder_out/spladder/ | cp -r ${merge_graphs} ${sample_id}/spladder_out/spladder/ | ||||
| cp -r ${merge_count_hdf5} ${sample_id}/spladder_out/spladder/ | cp -r ${merge_count_hdf5} ${sample_id}/spladder_out/spladder/ | ||||
| ln -s ${count_hdf5}/*.hdf5 ${sample_id}/spladder_out/spladder/ | |||||
| cp -r ${count_hdf5}/*.hdf5 ${sample_id}/spladder_out/spladder/ | |||||
| cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep hdf5$| grep $a; done >> count_hdf5.txt | cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep hdf5$| grep $a; done >> count_hdf5.txt | ||||
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