Update 'tasks/spladder_EC.wdl'

tasks/spladder_EC.wdl

@@ -6,6 +6,7 @@ task spladder_EC {
     File count_hdf5
     File reference_gtf_file
     File samples
+    File merge_count_hdf5
     
     String event_types
     String spladder_docker
@@ -29,6 +30,7 @@ task spladder_EC {
         cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep pickle$| grep $a; done >> pickle.txt
 		
         cp -r ${merge_graphs} ${sample_id}/spladder_out/spladder/
+        cp -r ${merge_count_hdf5} ${sample_id}/spladder_out/spladder/ 
 
         cp -r ${count_hdf5}/* ${sample_id}/spladder_out/spladder/
         cat ${samples} | while read a; do ls ${sample_id}/spladder_out/spladder/| grep count| grep $a; done >> count.txt