更新 'workflow.wdl'

workflow.wdl

@@ -4,12 +4,14 @@ import "./tasks/spladder_EC.wdl" as spladder_EC
 workflow {{ project_name }} {
     String sample_id
     File bam
+    File pickle
+    File merge_graphs
+    File count_hdf5
     File reference_gtf_file
-    File spladder
     File samples
+    File merge_count_hdf5
+    File pickle_list
 
-
-    String event_types
     String spladder_docker
     String spladder_cluster
     String disk_size	
@@ -19,8 +21,12 @@ workflow {{ project_name }} {
 		reference_gtf_file=reference_gtf_file,
 		sample_id=sample_id,
 		bam=bam,
-		spladder=spladder,
+		pickle=pickle,
+		merge_graphs=merge_graphs,
+		count_hdf5=count_hdf5,
 		samples=samples,
+		merge_count_hdf5=merge_count_hdf5,
+		pickle_list=pickle_list,
 		event_types=event_types,
 		spladder_docker=spladder_docker,
 		spladder_cluster=spladder_cluster,