更新 'workflow.wdl'

workflow.wdl

@@ -146,23 +146,6 @@ workflow {{ project_name }} {
 		disk_size = disk_size,
 		insert_size = insert_size
 	}
-			
-	call qualimapBAMqc.qualimapBAMqc as qualimapBAMqc {
-		input:
-		bam = samtools.out_percent,
-		docker = qualimapBAMqc_docker,
-		cluster_config = qualimapBAMqc_cluster_config,
-		disk_size = qualimapBAMqc_disk_size
-	}
-
-	call qualimapRNAseq.qualimapRNAseq as qualimapRNAseq {
-		input:
-		bam = samtools.out_percent,
-		docker = qualimapRNAseq_docker,
-		cluster_config = qualimapRNAseq_cluster_config,
-		disk_size = qualimapRNAseq_disk_size,
-		gtf = gtf
-	}
 
 	call stringtie.stringtie as stringtie {
 		input: 
@@ -187,4 +170,22 @@ workflow {{ project_name }} {
 		gene_abundance = stringtie.gene_abundance,
 		disk_size = disk_size
 	} 
+			
+	call qualimapBAMqc.qualimapBAMqc as qualimapBAMqc {
+		input:
+		bam = samtools.out_percent,
+		docker = qualimapBAMqc_docker,
+		cluster_config = qualimapBAMqc_cluster_config,
+		disk_size = qualimapBAMqc_disk_size
+	}
+
+	call qualimapRNAseq.qualimapRNAseq as qualimapRNAseq {
+		input:
+		bam = samtools.out_percent,
+		docker = qualimapRNAseq_docker,
+		cluster_config = qualimapRNAseq_cluster_config,
+		disk_size = qualimapRNAseq_disk_size,
+		gtf = gtf
+	}
+
 }