RNAseq-alignment/defaults

{   
    "fastp_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
    "fastp_cluster": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
    "trim_front1": "0",
    "trim_tail1": "0",
    "max_len1": "0",
    "trim_front2": "0",
    "trim_tail2": "0",
    "max_len2": "0",
    "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",
    "adapter_sequence_r2": "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT",
    "disable_adapter_trimming": "0",
    "length_required": "50",
    "length_required1": "20",
    "UMI": "0",
    "umi_len": "0",
    "umi_loc": "umi_loc",
    "qualified_quality_phred": "20",
    "disable_quality_filtering": "1",
    "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",
    "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
    "idx_prefix": "genome_snp_tran",
    "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
    "pen_cansplice":"0",
    "pen_noncansplice":"3",
    "pen_intronlen":"G,-8,1",
    "min_intronlen":"30",
    "max_intronlen":"500000",
    "maxins":"500",
    "minins":"0",
    "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
    "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "insert_size":"8000"
    }