|
|
|
|
|
|
|
|
"samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", |
|
|
"samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", |
|
|
"samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", |
|
|
"samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", |
|
|
"insert_size":"8000", |
|
|
"insert_size":"8000", |
|
|
"gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", |
|
|
|
|
|
"stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4", |
|
|
|
|
|
"stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", |
|
|
|
|
|
"minimum_length_allowed_for_the_predicted_transcripts":"200", |
|
|
|
|
|
"minimum_isoform_abundance":"0.01", |
|
|
|
|
|
"Junctions_no_spliced_reads":"10", |
|
|
|
|
|
"maximum_fraction_of_muliplelocationmapped_reads":"0.95", |
|
|
|
|
|
"fastqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", |
|
|
|
|
|
"fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", |
|
|
|
|
|
"fastqc_disk_size": "150", |
|
|
|
|
|
"qualimapBAMqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", |
|
|
|
|
|
"qualimapBAMqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", |
|
|
|
|
|
"qualimapBAMqc_disk_size": "500", |
|
|
|
|
|
"qualimapRNAseq_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", |
|
|
|
|
|
"qualimapRNAseq_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", |
|
|
|
|
|
"qualimapRNAseq_disk_size": "500", |
|
|
|
|
|
"fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0", |
|
|
|
|
|
"fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", |
|
|
|
|
|
"screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/", |
|
|
|
|
|
"fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf", |
|
|
|
|
|
"fastqscreen_disk_size": "200", |
|
|
|
|
|
"multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", |
|
|
|
|
|
"multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", |
|
|
|
|
|
"multiqc_disk_size": "100", |
|
|
|
|
|
"ballgown_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/pgx-ballgown:0.0.1", |
|
|
|
|
|
"ballgown_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc" |
|
|
|
|
|
} |
|
|
} |