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> >
> Last Updates: 2020/12/02 > Last Updates: 2020/12/02


Brief Introduction
# Brief Introduction
For RNA-seq data, from bams to AS Information files. For RNA-seq data, from bams to AS Information files.


Requirements
# Requirements
choppy choppy
Ali-Cloud Ali-Cloud
Linux Linux
# 激活choppy环境 # 激活choppy环境
```
$ source activate choppy (open-choppy-env) $ source activate choppy (open-choppy-env)


# 第一次安装 # 第一次安装
```
$ choppy install chenqingwang/RNAseq-alignment $ choppy install chenqingwang/RNAseq-alignment
# 非第一次安装 # 非第一次安装
```
$ choppy install chenqingwang/RNAseq-alignment -f $ choppy install chenqingwang/RNAseq-alignment -f


# 查询已安装APP # 查询已安装APP
```
$ choppy apps $ choppy apps
Quick Start

# Quick Start
```
# 准备 samples.csv 文件 # 准备 samples.csv 文件
$ choppy samples chenqingwang/RNAseq-alignment-latest > samples.csv $ choppy samples chenqingwang/RNAseq-alignment-latest > samples.csv
# 准备无默认参数的samples.csv 文件 # 准备无默认参数的samples.csv 文件

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