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README.md
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| > | > | ||||
| > Last Updates: 2020/12/02 | > Last Updates: 2020/12/02 | ||||
| Brief Introduction | |||||
| # Brief Introduction | |||||
| For RNA-seq data, from bams to AS Information files. | For RNA-seq data, from bams to AS Information files. | ||||
| Requirements | |||||
| # Requirements | |||||
| choppy | choppy | ||||
| Ali-Cloud | Ali-Cloud | ||||
| Linux | Linux | ||||
| # 激活choppy环境 | # 激活choppy环境 | ||||
| ``` | |||||
| $ source activate choppy (open-choppy-env) | $ source activate choppy (open-choppy-env) | ||||
| # 第一次安装 | # 第一次安装 | ||||
| ``` | |||||
| $ choppy install chenqingwang/RNAseq-alignment | $ choppy install chenqingwang/RNAseq-alignment | ||||
| # 非第一次安装 | # 非第一次安装 | ||||
| ``` | |||||
| $ choppy install chenqingwang/RNAseq-alignment -f | $ choppy install chenqingwang/RNAseq-alignment -f | ||||
| # 查询已安装APP | # 查询已安装APP | ||||
| ``` | |||||
| $ choppy apps | $ choppy apps | ||||
| Quick Start | |||||
| # Quick Start | |||||
| ``` | |||||
| # 准备 samples.csv 文件 | # 准备 samples.csv 文件 | ||||
| $ choppy samples chenqingwang/RNAseq-alignment-latest > samples.csv | $ choppy samples chenqingwang/RNAseq-alignment-latest > samples.csv | ||||
| # 准备无默认参数的samples.csv 文件 | # 准备无默认参数的samples.csv 文件 |
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