删除 'tasks/qualimapRNAseq.wdl'

tasks/qualimapRNAseq.wdl

-task qualimapRNAseq {
-	File bam
-	File gtf
-	String bamname = basename(bam,".bam")
-	String docker
-	String cluster_config
-	String disk_size
-
-	command <<<
-		set -o pipefail
-		set -e
-		nt=$(nproc)
-		/opt/qualimap/qualimap rnaseq -bam ${bam} -outformat HTML -outdir ${bamname}_RNAseq -gtf ${gtf} -pe --java-mem-size=10G
-		tar -zcvf ${bamname}_RNAseq_qualimap.zip ${bamname}_RNAseq
-		
-	>>>
-
-	runtime {
-		docker:docker
-		cluster:cluster_config
-		systemDisk:"cloud_ssd 40"
-		dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/"
-	}
-
-	output {
-		File rnaseq_zip = "${bamname}_RNAseq_qualimap.zip"
-		
-	}
-}