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"{{ project_name }}.minins": "{{ minins }}", |
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"{{ project_name }}.minins": "{{ minins }}", |
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"{{ project_name }}.samtools_docker": "{{ samtools_docker }}", |
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"{{ project_name }}.samtools_docker": "{{ samtools_docker }}", |
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"{{ project_name }}.samtools_cluster": "{{ samtools_cluster }}", |
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"{{ project_name }}.samtools_cluster": "{{ samtools_cluster }}", |
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"{{ project_name }}.insert_size": "{{ insert_size }}", |
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"{{ project_name }}.gtf": "{{ gtf }}", |
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"{{ project_name }}.stringtie_docker": "{{ stringtie_docker }}", |
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"{{ project_name }}.stringtie_cluster": "{{ stringtie_cluster }}", |
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"{{ project_name }}.minimum_length_allowed_for_the_predicted_transcripts": "{{ minimum_length_allowed_for_the_predicted_transcripts }}", |
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"{{ project_name }}.minimum_isoform_abundance": "{{ minimum_isoform_abundance }}", |
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"{{ project_name }}.Junctions_no_spliced_reads": "{{ Junctions_no_spliced_reads }}", |
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"{{ project_name }}.maximum_fraction_of_muliplelocationmapped_reads": "{{ maximum_fraction_of_muliplelocationmapped_reads }}", |
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"{{ project_name }}.fastqc_cluster_config": "{{ fastqc_cluster_config }}", |
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"{{ project_name }}.fastqc_docker": "{{ fastqc_docker }}", |
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"{{ project_name }}.fastqc_disk_size": "{{ fastqc_disk_size }}", |
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"{{ project_name }}.qualimapBAMqc_docker": "{{ qualimapBAMqc_docker }}", |
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"{{ project_name }}.qualimapBAMqc_cluster_config": "{{ qualimapBAMqc_cluster_config }}", |
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"{{ project_name }}.qualimapBAMqc_disk_size": "{{ qualimapBAMqc_disk_size }}", |
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"{{ project_name }}.qualimapRNAseq_docker": "{{ qualimapRNAseq_docker }}", |
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"{{ project_name }}.qualimapRNAseq_cluster_config": "{{ qualimapRNAseq_cluster_config }}", |
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"{{ project_name }}.qualimapRNAseq_disk_size": "{{ qualimapRNAseq_disk_size }}", |
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"{{ project_name }}.fastqscreen_docker": "{{ fastqscreen_docker }}", |
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"{{ project_name }}.fastqscreen_cluster_config": "{{ fastqscreen_cluster_config }}", |
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"{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}", |
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"{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}", |
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"{{ project_name }}.fastqscreen_disk_size": "{{ fastqscreen_disk_size }}", |
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"{{ project_name }}.ref_dir": "{{ ref_dir }}", |
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"{{ project_name }}.multiqc_cluster_config": "{{ multiqc_cluster_config }}", |
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"{{ project_name }}.multiqc_docker": "{{ multiqc_docker }}", |
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"{{ project_name }}.multiqc_disk_size": "{{ multiqc_disk_size }}", |
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"{{ project_name }}.ballgown_docker": "{{ ballgown_docker }}", |
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"{{ project_name }}.ballgown_cluster": "{{ ballgown_cluster }}", |
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"{{ project_name }}.disk_size": "{{ disk_size if disk_size != '' else 200}}" |
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"{{ project_name }}.disk_size": "{{ disk_size if disk_size != '' else 200}}" |
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} |
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} |