Haonan917
1 vuosi sitten
3 muutettua tiedostoa jossa 0 lisäystä ja 5 poistoa
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defaults
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| "REPLACE_SENTIEON_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-replaced:1.0", | "REPLACE_SENTIEON_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-replaced:1.0", | ||||
| "DEEPVARIANT_DOCKER": "xxx", | "DEEPVARIANT_DOCKER": "xxx", | ||||
| "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", | "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", | ||||
| "GATK_DOCKER": "", | |||||
| "vcf_D5": "", | "vcf_D5": "", | ||||
| "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed", | "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed", | ||||
| "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", | "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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tasks/deduped_Metrics.wdl
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| task deduped_Metrics { | task deduped_Metrics { | ||||
| File ref_dir | File ref_dir | ||||
| String SENTIEON_INSTALL_DIR | |||||
| String fasta | String fasta | ||||
| File Dedup_bam | File Dedup_bam | ||||
| File Dedup_bam_index | File Dedup_bam_index |
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workflow.wdl
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| File? vcf_F7 | File? vcf_F7 | ||||
| File? vcf_M8 | File? vcf_M8 | ||||
| String SENTIEON_INSTALL_DIR | |||||
| String SENTIEON_LICENSE | |||||
| String REPLACE_SENTIEON_DOCKER | String REPLACE_SENTIEON_DOCKER | ||||
| String DEEPVARIANT_DOCKER | String DEEPVARIANT_DOCKER | ||||
| String SENTIEONdocker | |||||
| String FASTQCdocker | String FASTQCdocker | ||||
| String FASTQSCREENdocker | String FASTQSCREENdocker | ||||
| String QUALIMAPdocker | String QUALIMAPdocker |
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