Haonan917
1 år sedan
1 ändrade filer med 0 tillägg och 3 borttagningar
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tasks/Haplotyper.wdl
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| --reads=${recaled_bam} \ | --reads=${recaled_bam} \ | ||||
| --output_vcf=${sample}_hc.vcf \ | --output_vcf=${sample}_hc.vcf \ | ||||
| --num_shards=$(nproc) | --num_shards=$(nproc) | ||||
| /opt/gatk-4.4/gatk IndexFeatureFile -I ${sample}_hc.vcf -O ${sample}_hc.vcf.idx | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| output { | output { | ||||
| File vcf = "${sample}_hc.vcf" | File vcf = "${sample}_hc.vcf" | ||||
| File vcf_idx = "${sample}_hc.vcf.idx" | |||||
| } | } | ||||
| } | } | ||||
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