選択できるのは25トピックまでです。 トピックは、先頭が英数字で、英数字とダッシュ('-')を使用した35文字以内のものにしてください。

30 行
2.0KB

  1. {
  2. "benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/",
  3. "fasta": "GRCh38.d1.vd1.fa",
  4. "BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
  5. "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  6. "BEDTOOLSdocker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",
  7. "PICARDdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard:2.25.4",
  8. "disk_size": "500",
  9. "reference_bed_dict": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.dict",
  10. "FASTQCdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:0.11.8",
  11. "MULTIQCdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",
  12. "SMALLcluster_config": "OnDemand bcs.ps.g.xlarge img-ubuntu-vpc",
  13. "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
  14. "fastq_1_D5": "",
  15. "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  16. "BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
  17. "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
  18. "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
  19. "REPLACE_SENTIEON_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-replaced:2.0",
  20. "DEEPVARIANT_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/deepvariant:v1.5.0_20230721",
  21. "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
  22. "vcf_D5": "",
  23. "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed",
  24. "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
  25. "dbsnp": "dbsnp_146.hg38.vcf",
  26. "MENDELIANdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1",
  27. "DIYdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:1.5",
  28. "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  29. "pl": "ILLUMINA"
  30. }