chenhaonan
/
quartet_dna_quality_control_wes_big_pipeline
bifurqué depuis renluyao/quartet_dna_quality_control_wes_big_pipeline
Suivre 1
Ajouter aux favoris 0
Bifurcation 0
Code Tickets 0 Demandes d'ajout 0 Versions 1 Wiki Activité
Vous ne pouvez pas sélectionner plus de 25 sujets Les noms de sujets doivent commencer par une lettre ou un nombre, peuvent contenir des tirets ('-') et peuvent comporter jusqu'à 35 caractères.
16 Révisions
1 Branche
Aborescence: ddead72efc
Branches Tags
${ item.name }
Créer la branche ${ searchTerm }
de 'ddead72efc'
${ noResults }
quartet_dna_quality_control.../defaults

30 lignes
2.0KB
Brut Annotations Historique 

  1. {

  2.   "benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/",

  3.   "fasta": "GRCh38.d1.vd1.fa",

  4.   "BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  5.   "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  6.   "BEDTOOLSdocker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  7.   "PICARDdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard:2.25.4",

  8.   "disk_size": "500",

  9.   "reference_bed_dict": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.dict",

  10.   "FASTQCdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:0.11.8",

  11.   "MULTIQCdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

  12.   "SMALLcluster_config": "OnDemand bcs.ps.g.xlarge img-ubuntu-vpc",

  13.   "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  14.   "fastq_1_D5": "",

  15.   "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  16.   "BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  17.   "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  18.   "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  19.   "REPLACE_SENTIEON_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-replaced:2.0",

  20.   "DEEPVARIANT_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/deepvariant:v1.5.0_20230721",

  21.   "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  22.   "vcf_D5": "",

  23.   "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed",

  24.   "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",

  25.   "dbsnp": "dbsnp_146.hg38.vcf",

  26.   "MENDELIANdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1",

  27.   "DIYdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:1.5",

  28.   "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  29.   "pl": "ILLUMINA"

  30. }