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- {
- "{{ project_name }}.benchmarking_dir": "{{ benchmarking_dir }}",
- "{{ project_name }}.vcf_F7": "{{ vcf_F7 }}",
- "{{ project_name }}.vcf_M8": "{{ vcf_M8 }}",
- "{{ project_name }}.fasta": "{{ fasta }}",
- "{{ project_name }}.BENCHMARKdocker": "{{ BENCHMARKdocker }}",
- "{{ project_name }}.vcf_D6": "{{ vcf_D6 }}",
- "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
- "{{ project_name }}.BEDTOOLSdocker": "{{ BEDTOOLSdocker }}",
- "{{ project_name }}.PICARDdocker": "{{ PICARDdocker }}",
- "{{ project_name }}.disk_size": "{{ disk_size }}",
- "{{ project_name }}.FASTQCdocker": "{{ FASTQCdocker }}",
- "{{ project_name }}.MULTIQCdocker": "{{ MULTIQCdocker }}",
- "{{ project_name }}.bed": "{{ bed }}",
- "{{ project_name }}.reference_bed_dict": "{{ reference_bed_dict }}",
- "{{ project_name }}.fastq_2_M8": "{{ fastq_2_M8 }}",
- "{{ project_name }}.project": "{{ project_name }}",
- "{{ project_name }}.pl": "{{ pl }}",
- "{{ project_name }}.fastq_1_M8": "{{ fastq_1_M8 }}",
- "{{ project_name }}.SMALLcluster_config": "{{ SMALLcluster_config }}",
- "{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
- "{{ project_name }}.fastq_1_D5": "{{ fastq_1_D5 }}",
- "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
- "{{ project_name }}.BIGcluster_config": "{{ BIGcluster_config }}",
- "{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
- "{{ project_name }}.fastq_2_D5": "{{ fastq_2_D5 }}",
- "{{ project_name }}.FASTQSCREENdocker": "{{ FASTQSCREENdocker }}",
- "{{ project_name }}.fastq_2_F7": "{{ fastq_2_F7 }}",
- "{{ project_name }}.fastq_1_D6": "{{ fastq_1_D6 }}",
- "{{ project_name }}.fastq_1_F7": "{{ fastq_1_F7 }}",
- "{{ project_name }}.REPLACE_SENTIEON_DOCKER": "{{ REPLACE_SENTIEON_DOCKER }}",
- "{{ project_name }}.DEEPVARIANT_DOCKER": "{{ DEEPVARIANT_DOCKER }}",
- "{{ project_name }}.QUALIMAPdocker": "{{ QUALIMAPdocker }}",
- "{{ project_name }}.vcf_D5": "{{ vcf_D5 }}",
- "{{ project_name }}.benchmark_region": "{{ benchmark_region }}",
- "{{ project_name }}.db_mills": "{{ db_mills }}",
- "{{ project_name }}.dbsnp": "{{ dbsnp }}",
- "{{ project_name }}.MENDELIANdocker": "{{ MENDELIANdocker }}",
- "{{ project_name }}.fastq_2_D6": "{{ fastq_2_D6 }}",
- "{{ project_name }}.DIYdocker": "{{ DIYdocker }}",
- "{{ project_name }}.ref_dir": "{{ ref_dir }}"
- }
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