trec/workflow.wdl

import "./tasks/trec.wdl" as trec
workflow {{ project_name }} {
    String sample_id
    File tumorBAM
    File tumorBAM_bai
    String TRA_cn
    String tumor_purity

    String trec_docker
    String trec_cluster
    String disk_size

        call trec.trec as trec {
                input:	
                sample_id=sample_id,
                tumorBAM=tumorBAM,
                tumorBAM_bai=tumorBAM_bai,
                TRA_cn=TRA_cn,
                tumor_purity=tumor_purity,
                docker=trec_docker,
                cluster=trec_cluster,
                disk_size=disk_size
        }


}