suppa2/workflow.wdl

import "./tasks/suppa2.wdl" as suppa2

workflow {{ project_name }} {
    String sample_id
    File fastq1
    File fastq2
    File suppa2_GTF
    File suppa2_ioe
    File salmon_index

    String suppa2_docker
    String suppa2_cluster
    String disk_size

        call suppa2.suppa2 as suppa2 {
                input:	
                sample_id=sample_id,
                fastq1=fastq1,
                fastq2=fastq2,
                suppa2_GTF=suppa2_GTF,
                suppa2_ioe=suppa2_ioe,
                salmon_index=salmon_index,
                docker=suppa2_docker,
                cluster=suppa2_cluster,
                disk_size=disk_size

        }


}