starfusion/workflow.wdl

import "./tasks/starfusion.wdl" as starfusion
workflow {{ project_name }} {
    String sample_id
    File fastq1
    File fastq2
    File starfusion_database_dir

    String starfusion_docker
    String starfusion_cluster
    String disk_size

        call starfusion.starfusion as starfusion {
                input:	
                sample_id=sample_id,
                fastq1=fastq1,
                fastq2=fastq2,
                database_dir=starfusion_database_dir,
                docker=starfusion_docker,
                cluster=starfusion_cluster,
                disk_size=disk_size

        }


}