更新 'tasks/polysolver.wdl'

_

tasks/polysolver.wdl

@@ -23,7 +23,7 @@ task polysolver {
             mv ${sample_id}/$line.bam.bai ${sample_id}/$new_name.bam.bai
         done
         
-        normBAM_file=`ls ./${sample_id}/|grep bam|grep -v "TT"|grep -v ".T.sorted"|grep -v "bai"`
+        normBAM_file=`ls ./${sample_id}/|grep bam|grep -v "TT"|grep -v "_T_sorted"|grep -v "bai"`
         
         bash /home/polysolver/scripts/shell_call_hla_type ./${sample_id}/$normBAM_file Asian 1 hg38 STDFQ  0 ./${sample_id}/${sample_id}_hla_type/
         cut -f 2- ./${sample_id}/${sample_id}_hla_type/winners.hla.txt|sed 's/\s/\n/g' > ./${sample_id}_winners.hlas