pindel/workflow.wdl

import "./tasks/pindel.wdl" as pindel

workflow {{ project_name }} {
  String sample_id
  File bam
  File reference
  File reference_fai
  String pindel_docker
  String pindel_cluster
  String disk_size

  call pindel.pindel as pindel {
    input:	
    sample_id=sample_id,
    bam=bam,
    reference=reference,
    reference_fai=reference_fai,
    docker=pindel_docker,
    cluster=pindel_cluster,
    disk_size=disk_size
  }
}