pindel/workflow.wdl

import "./tasks/pindel.wdl" as pindel

workflow run_pindel {
    String sample_id
    File bam
    File reference
    File reference_fai

    String pindel_docker

        call pindel.pindel as pindel {
                input:	
                sample_id=sample_id,
                bam=bam,
                reference=reference,
                reference_fai=reference_fai,
                docker=pindel_docker
        }


}