lohhla_hg38/workflow.wdl

import "./tasks/lohhla.wdl" as lohhla
workflow {{ project_name }} {
    String sample_id
    File normBAM
    File normBAM_bai
    File tumorBAM
    File tumorBAM_bai
    File hlas
    File ascat

    String lohhla_docker
    String lohhla_cluster
    String disk_size

        call lohhla.lohhla as lohhla {
                input:	
                sample_id=sample_id,
                normBAM=normBAM,
                normBAM_bai=normBAM_bai,
                tumorBAM=tumorBAM,
                tumorBAM_bai=tumorBAM_bai,
                hlas=hlas,
                ascat=ascat,
                docker=lohhla_docker,
                cluster=lohhla_cluster,
                disk_size=disk_size

        }


}